[scalac] C:\cygwin\home\jonesmic\svn-oncinfo\shred\src\com\nibri\oncology\util\scala\shRNAPattern.scala:5: error: SHRNA is not a member of com.nibri.oncology.shred
[scalac] import com.nibri.oncology.shred.SHRNA
The reason this was not working is described here. joint-compilation-of-scala-and-java-sources
I fixed it by doing the following change in my build.xml file.
Original:
<scalac srcdir="${src.dir}" destdir="${build.dir}" classpathref="master-classpath" force="changed">
<include name="**/*.scala"/>
</scalac>
Final:
<scalac srcdir="${src.dir}" destdir="${build.dir}" classpathref="master-classpath" force="changed">
<include name="**/*.scala"/>
<include name="**/*.java"/>
</scalac>
